Index

A

add_gene() (pinetree.Genome method) add_mask() (pinetree.Genome method) add_polymerase() (pinetree.Model method) add_promoter() (pinetree.Genome method) add_reaction() (pinetree.Model method)

add_ribosome() (pinetree.Model method) add_rnase_site() (pinetree.Genome method) add_species() (pinetree.Model method) add_terminator() (pinetree.Genome method) add_weights() (pinetree.Genome method)

G

Genome (class in pinetree)

M

Model (class in pinetree)

R

Random (C++ type) Random::gen_ (C++ member) Random::random (C++ function) Random::seed (C++ function)

Random::seeded_ (C++ member) Random::WeightedChoice (C++ function), [1] Random::WeightedChoiceIndex (C++ function) register_genome() (pinetree.Model method)

S

seed() (pinetree.Model method)

simulate() (pinetree.Model method)